@article{doi:10.1139/facets-2016-0031, author = {Yang, Henry and Puri, Akshit and Padda, Kiran Preet and Chanway, Chris P.}, title = {Substrate utilization by endophytic bacteria Paenibacillus polymyxa P2b-2R that may facilitate bacterial entrance and survival inside diverse plant hosts}, journal = {FACETS}, volume = {2}, number = {}, pages = {120-130}, year = {2017}, doi = {10.1139/facets-2016-0031}, URL = { https://doi.org/10.1139/facets-2016-0031 }, eprint = { https://doi.org/10.1139/facets-2016-0031 } , abstract = { Bacterial endophytes are thought to enter plants either through pre-existing openings in plant tissues or by creating openings by hydrolyzing major plant cell wall components. A lodgepole endophyte, Paenibacillus polymyxa P2b-2R, consistently formed endophytic colonies when inoculated in diverse plant hosts, viz., lodgepole pine, western red cedar, corn, canola, and tomato. We were interested to know, whether or not this bacterial strain possesses enzymes that can hydrolyze three major plant cell wall components namely cellulose, xylan, and pectin to facilitate entrance into the host plants. Using a BIOLOG assay, we also tested this bacterial strain’s ability to utilize carbon sources that might facilitate its entrance and hence its survival inside host plants. Paenibacillus polymyxa P2b-2R hydrolyzed sodium carboxymethylcellulose, beechwood xylan, and sodium polypectate and utilized 39 of the 95 carbon sources (41\%) tested. Of the 39 carbon substrates oxidized by P2b-2R, the “carbohydrates” group represents the largest source of utilizable carbon (23 out of 39). Thus, it can be concluded that P. polymyxa P2b-2R is able to degrade major cell wall components (cellulose, xylan, and pectin) and utilize some of the available carbon substrates, possibly to gain entry and survive inside the plant and form endophytic colonies thereafter. } } @article {, author = {Adriano-Anaya M}, author = {Salvador-Figueroa M}, author = {Ocampo JA}, author = {Garcia-Romera I}, title = {Plant cell-wall degrading hydrolytic enzymes of Gluconacetobacter diazotrophicus}, journal = {Symbiosis}, volume = {40}, pages = {151}, year = {2005} } @article {, author = {Anand R}, author = {Chanway C}, title = {Detection of GFP-labelled Paenibacillus polymyxa in autofluorescing pine seedling tissues}, journal = {Biology and Fertility of Soils}, volume = {49}, pages = {111}, year = {2013} } @article {, author = {Anand R}, author = {Chanway C}, title = {N2-fixation and growth promotion in cedar colonized by an endophytic strain of Paenibacillus polymyxa}, journal = {Biology and Fertility of Soils}, volume = {49}, pages = {235}, year = {2013} } @article {, author = {Anand R}, author = {Grayston S}, author = {Chanway C}, title = {N2-fixation and seedling growth promotion of lodgepole pine by endophytic Paenibacillus polymyxa}, journal = {Microbial Ecology}, volume = {66}, pages = {369}, year = {2013} } @article {, author = {Azevedo JL}, author = {Maccheroni W}, author = {Pereira JO}, author = {Araújo WL}, title = {Endophytic microorganisms: a review on insect control and recent advances on tropical plants}, journal = {Electronic Journal of Biotechnology}, volume = {3}, pages = {40}, year = {2000} } @article {, author = {Aziz A}, author = {Heyraud A}, author = {Lambert B}, title = {Oligogalacturonide signal transduction, induction of defense-related responses and protection of grapevine against Botrytis cinerea}, journal = {Planta}, volume = {218}, pages = {767}, year = {2004} } @article {, author = {Bal A}, author = {Anand R}, author = {Berge O}, author = {Chanway CP}, title = {Isolation and identification of diazotrophic bacteria from internal tissues of Pinus contorta and Thuja plicata}, journal = {Canadian Journal of Forest Research}, volume = {42}, pages = {807}, year = {2012} } @article {, author = {Bochner BR}, title = {Sleuthing out bacterial identities}, journal = {Nature}, volume = {339}, pages = {157}, year = {1989} } @article {, author = {Bulgarelli D}, author = {Schlaeppi K}, author = {Spaepen S}, author = {van Themaat EVL}, author = {Schulze-Lefert P}, title = {Structure and functions of the bacterial microbiota of plants}, journal = {Annual Review of Plant Biology}, volume = {64}, pages = {807}, year = {2013} } @article {, author = {Cho KM}, author = {Hong SY}, author = {Lee SM}, author = {Kim YH}, author = {Kahng GG}, author = {Lim YP}, title = {Endophytic bacterial communities in ginseng and their antifungal activity against pathogens}, journal = {Microbial Ecology}, volume = {54}, pages = {341}, year = {2007} } @article {, author = {Compant S}, author = {Reiter B}, author = {Sessitsch A}, author = {Nowak J}, author = {Clément C}, author = {Ait Barka E}, title = {Endophytic colonization of Vitis vinifera L. by plant growth-promoting bacterium Burkholderia sp. strain PsJN}, journal = {Applied and Environmental Microbiology}, volume = {71}, pages = {1685}, year = {2005} } @article {, author = {Dong Z}, author = {Canny MJ}, author = {McCully ME}, author = {Roboredo MR}, author = {Cabadilla CF}, author = {Ortega E}, title = {A nitrogen-fixing endophyte of sugarcane stems (a new role for the apoplast)}, journal = {Plant Physiology}, volume = {105}, pages = {1139}, year = {1994} } @article {, author = {Fouts DE}, author = {Tyler HL}, author = {de Boy RT}, author = {Daugherty S}, author = {Ren Q}, author = {Badger JH}, title = {Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice}, journal = {PLoS Genetics}, volume = {4}, pages = {e1000141}, year = {2008} } @article {, author = {Galletti R}, author = {de Lorenzo G}, author = {Ferrari S}, title = {Host-derived signals activate plant innate immunity}, journal = {Plant Signaling and Behavior}, volume = {4}, pages = {33}, year = {2009} } @article {, author = {Gottel NR}, author = {Castro HF}, author = {Kerley M}, author = {Yang Z}, author = {Pelletier DA}, author = {Podar M}, title = {Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types}, journal = {Applied and Environmental Microbiology}, volume = {77}, pages = {5934}, year = {2011} } @article {, author = {Hallmann J}, author = {Quadt-Hallmann A}, author = {Mahaffee WF}, author = {Kloepper JW}, title = {Bacterial endophytes in agricultural crops}, journal = {Canadian Journal of Microbiology}, volume = {43}, pages = {895}, year = {1997} } @article {, author = {Hurek T}, author = {Reinhold-Hurek B}, author = {van Montagu M}, author = {Kellenberg E}, title = {Root colonization and systemic spreading of Azoarcus sp. strain BH72 in grasses}, journal = {Journal of Bacteriology}, volume = {176}, pages = {1913}, year = {1994} } @article {, author = {James EK}, author = {Reis VM}, author = {Olivares FL}, author = {Baldani JI}, author = {Döbereiner J}, title = {Infection of sugar cane by the nitrogen-fixing bacterium Acetobacter diazotrophicus}, journal = {Journal of Experimental Botany}, volume = {45}, pages = {757}, year = {1994} } @article {, author = {Kavino M}, author = {Harish S}, author = {Kumar N}, author = {Saravanakumar D}, author = {Damodaran T}, author = {Sooianathasundaram K}, title = {Rhizosphere and endophytic bacteria for induction of systemic resistance of banana plantlets against bunchy top virus}, journal = {Soil Biology and Biochemistry}, volume = {39}, pages = {1087}, year = {2007} } @article {, author = {Mateos PF}, author = {Jimenez-Zurdo JI}, author = {Chen J}, author = {Squartini AS}, author = {Haack SK}, author = {Martinez-Molina E}, title = {Cell-associated pectinolytic and cellulolytic enzymes in Rhizobium leguminosarum biovar trifolii}, journal = {Applied and Environmental Microbiology}, volume = {58}, pages = {1816}, year = {1992} } @article {, author = {Muñoz-Rojas J}, author = {Caballero-Mellado J}, title = {Population dynamics of Gluconacetobacter diazotrophicus in sugarcane cultivars and its effect on plant growth}, journal = {Microbial Ecology}, volume = {46}, pages = {454}, year = {2003} } @article {, author = {Nothnagel EA}, author = {McNeil M}, author = {Albersheim P}, author = {Dell A}, title = {Host-pathogen interactions: XXII. A galacturonic acid oligosaccharide from plant cell walls elicits phytoalexins}, journal = {Plant Physiology}, volume = {71}, pages = {916}, year = {1983} } @article {, author = {Padda KP}, author = {Puri A}, author = {Chanway CP}, title = {Effect of GFP tagging of Paenibacillus polymyxa P2b-2R on its ability to promote growth of canola and tomato seedlings}, journal = {Biology and Fertility of Soils}, volume = {52}, pages = {377}, year = {2016} } @article {, author = {Padda KP}, author = {Puri A}, author = {Chanway CP}, title = {Plant growth promotion and nitrogen fixation in canola (Brassica napus) by an endophytic strain of Paenibacillus polymyxa and its GFP-tagged derivative in a long-term study}, journal = {Botany}, volume = {94}, pages = {1209}, year = {2016} } @article {, author = {Puri A}, author = {Padda KP}, author = {Chanway CP}, title = {Can a diazotrophic endophyte originally isolated from lodgepole pine colonize an agricultural crop (corn) and promote its growth?}, journal = {Soil Biology and Biochemistry}, volume = {89}, pages = {210}, year = {2015} } @article {, author = {Puri A}, author = {Padda KP}, author = {Chanway CP}, title = {Evidence of nitrogen fixation and growth promotion in canola (Brassica napus L.) by an endophytic diazotroph Paenibacillus polymyxa P2b-2R}, journal = {Biology and Fertility of Soils}, volume = {52}, pages = {119}, year = {2016} } @article {, author = {Puri A}, author = {Padda KP}, author = {Chanway CP}, title = {Seedling growth promotion and nitrogen fixation by a bacterial endophyte Paenibacillus polymyxa P2b-2R and its GFP derivative in corn in a long-term trial}, journal = {Symbiosis}, volume = {69}, pages = {123}, year = {2016} } @article {, author = {Ravi AV}, author = {Musthafa KS}, author = {Jegathammbal G}, author = {Kathiresan K}, author = {Pandian SK}, title = {Screening and evaluation of probiotics as a biocontrol agent against pathogenic Vibrios in marine aquaculture}, journal = {Letters in Applied Microbiology}, volume = {45}, pages = {219}, year = {2007} } @article {, author = {Reinhold-Hurek B}, author = {Maes T}, author = {Gemmer S}, author = {van Montagu M}, author = {Hurek T}, title = {An endoglucanase is involved in infection of rice roots by the not-cellulose-metabolizing endophyte Azoarcus sp. strain BH72}, journal = {Molecular Plant–Microbe Interactions}, volume = {19}, pages = {181}, year = {2006} } @article {, author = {Rennie RJ}, title = {A single medium for the isolation of acetylene-reducing (dinitrogen-fixing) bacteria from soils}, journal = {Canadian Journal of Microbiology}, volume = {27}, pages = {8}, year = {1981} } @article {, author = {Shishido M}, author = {Breuil C}, author = {Chanway CP}, title = {Endophytic colonization of spruce by plant growth-promoting rhizobacteria}, journal = {FEMS Microbiology Ecology}, volume = {29}, pages = {191}, year = {1999} } @article {, author = {Shishido M}, author = {Loeb BM}, author = {Chanway CP}, title = {External and internal root colonization of lodgepole pine seedlings by two growth-promoting Bacillus strains originated from different root microsites}, journal = {Canadian Journal of Microbiology}, volume = {41}, pages = {707}, year = {1995} } @article {, author = {Timmusk S}, author = {Grantcharova N}, author = {Wagner EGH}, title = {Paenibacillus polymyxa invades plant roots and forms biofilms}, journal = {Applied and Environmental Microbiology}, volume = {71}, pages = {7292}, year = {2005} } @article {, author = {Yang H}, author = {Puri A}, author = {Padda KP}, author = {Chanway CP}, title = {Effects of Paenibacillus polymyxa inoculation and different soil nitrogen treatments on lodgepole pine seedling growth}, journal = {Canadian Journal of Forest Research}, volume = {46}, pages = {816}, year = {2016} }