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- OPEN ACCESS
- Jessie S. Reynolds,
- Chris K. Elvidge,
- Ian J. Vander Meulen,
- Caleb T. Hasler,
- Richard A. Frank,
- John V. Headley,
- L. Mark Hewitt, and
- Diane M. Orihel
We evaluated whether naphthenic acid fraction compounds (NAFCs) extracted from oil sand tailings adversely affect fish survival and behaviour. Following a before–after-control-impact design, we housed wild-caught juvenile yellow perch (Perca flavescens) in outdoor mesocosms to assess survival and behaviour under baseline conditions, then exposed fish to one of three treatments: negative control, 2 mg/L NAFC, or 15 mg/L NAFC. We performed behavioural assays (no-stimulus activity, food stimulus, and predator stimulus using a model bird) and assessed a comprehensive suite of endpoints (equilibrium losses, activity, shoaling, burst swimming, freezing, and space use). We found that exposure to 15 mg/L NAFCs substantially reduced fish survival and impaired fish equilibrium in all three behavioural tests. Furthermore, exposure to NAFCs impaired anti-predator behaviour: while the activity of control fish increased by two-fold in response to a predator stimulus, fish exposed to 2 or 15 mg/L NAFC did not change their activity levels after stimulation. No significant changes were observed in other behavioural endpoints. Overall, our findings suggest that a week-long exposure to NAFCs at concentrations commonly found in tailings ponds, constructed wetlands, and other mining-impacted waters may affect multiple facets of fish behaviour that could ultimately lead to reduced fitness in fish populations. - OPEN ACCESSCanada lynx (Lynx canadensis) are keystone predators. However, contact with congenerics, like the bobcat (Lynx rufus), could alter lynx trophic ecology and destabilize boreal food webs. We set out to describe the trophic niches of these species in allopatry and sympatry to assess how resources are partitioned among them and project whether the northward expansion of the bobcats’ range will lead to the displacement of lynx. To quantify the trophic niche, we measured stable isotopes of carbon and nitrogen in muscle and liver samples of bobcat and lynx. Our results indicate that both bobcat and lynx consumed snowshoe hare as their primary prey. However, lynx specialized on hare throughout our study, whereas bobcats foraged as generalists in sympatry with lynx and hare-specialists in allopatry. Our results highlight the contrasting ecological strategies of two congeneric felids and underscore the potential relevance of foraging efficiency in shaping the trophic niche of consumers in competitive environments.
- OPEN ACCESSAssessing cat local abundance provides information on where wandering cat numbers are highest and what habitats or factors are associated with wandering cats. A variety of stakeholders can lead this research and then use the findings to make scientifically informed decisions to guide the physical locations of cat management actions. Here, we document a framework that engages community members, uses minimal equipment (six trail cameras), and provides scientifically derived information for interested parties to inform, direct, or test the effectiveness of cat management practices. Using these methods in Gatineau, Quebec, Canada, we demonstrate how we estimated cat population size and cat local abundances across a variety of co-variates while accounting for non-perfect detection by using 55 trail camera sites and N-mixture models. Urban areas had three-fold higher local wandering cat abundances than parkland areas, and neighbourhoods below the median income had the highest local abundances of wandering cats. We estimated there are between 8905 and 48,419 (mean 21,298) wandering cats in Gatineau, with 18%–73% of those cats being unowned. These findings can be used to identify locations for future cat management. If estimates of cat abundance are repeated, they can assess the effectiveness of management actions.
- OPEN ACCESSLong-term ecological research (LTER) projects are considered valuable training grounds for graduate student researchers, yet student voices are largely absent from discussions of LTER merits in the literature. We aimed to identify benefits and challenges encountered by current and former graduate students in conducting graduate research within LTER projects. To explore graduate student experiences and perspectives, we conducted a survey comprising both closed-ended questions (i.e., multiple choice and Likert scale) and open-ended questions. From the responses, we identified emergent categories related to positive and negative experiences using sentiment analysis. We found agreement with purported benefits in areas including networking and access to established field sites and protocols. However, participants also identified data accessibility, authorship decisions, communication, and interpersonal conflicts as significant sources of challenges. We synthesized survey results with existing literature to provide actionable recommendations for principal investigators in four main areas (data, authorship, communication, and management) through an LTER lens. In addition to providing longitudinal data, LTER projects offer graduate students both physical and methodological infrastructure that can serve as the scaffold for new research questions to be developed. However, the likelihood of success of student research, as well as the success of the students themselves, can be improved when the needs of graduate students are prioritized.
- OPEN ACCESSThe parallel evolution of lateral plates and body shape in the threespine stickleback (Gasterosteus aculeatus) is an iconic example of adaptation. We test a case of contemporary evolutionary transition in a recently isolated population of marine G. aculeatus in British Columbia, Canada. We investigate Ectodysplasin (Eda) genotypes, plate counts, neutral genetic divergence, and whole-body phenotypes to determine the genetic and phenotypic distance between this population and nearby comparative populations. Our focal population is in the process of adapting both genetically and phenotypically to a freshwater environment, and we provide an example of the genetic basis for parallel evolution on a contemporary timescale. The frequency of Eda genotypes and lateral plate phenotypes in our focal population is not consistent with those of marine or fully freshwater populations. Although our focal population is genetically distinct from nearby marine populations, these fish still more closely resemble marine populations in overall body shape while demonstrating an intriguing intermediate phenotype. Eda frequency and lateral plate phenotype change faster than body shape in response to freshwater conditions, suggesting that the pace of adaptation differs across traits in response to the same environmental conditions. Our results further bolster the case for G. aculeatus as a key model of contemporary evolution.
- OPEN ACCESS
- Samantha M. Knight,
- Barbara I. Bleho,
- Melissa A. Grantham,
- Richard Westwood,
- Nicola Koper, and
- Cary D. Hamel
Poweshiek skipperling (Oarisma poweshiek Parker, 1870) populations have declined precipitously in the past few decades, and their global range is now restricted to two isolated regions, one of which is the managed Manitoba tall grass prairie in Canada. In this paper, we used a decade of survey data from 2010 to 2019 to understand how habitat features, management practices, and extreme weather impact Poweshiek skipperling abundance in Manitoba. The strongest predictor of abundance was the density of black-eyed Susans (Rudbeckia hirta L.), a primary nectar plant for adults. Poweshiek skipperling abundance also had a negative relationship with both the number of years since a burn occurred and the number of years since grazing occurred. Cumulative precipitation during their active period (May–June) had a negative relationship with skipperling abundance, whereas warm early springs and cool temperatures during the active period had positive relationships. These results suggest that management actions that maintain tall grass prairie habitat in an early successional stage (burning and grazing) and maintain important nectar sources benefit this population. In contrast, extreme weather events had varying effects on Poweshiek skipperling abundance. Results from this study inform ongoing management practices in the Manitoba tall grass prairie to support this endangered population. - OPEN ACCESSExpanding local rice production to meet consumer demand is a priority action under the Government of Ghana’s Planting for Food and Jobs initiative. While studies on yield-enhancing interventions abound, fewer studies focus on food safety issues (e.g., the potential toxic element status of the production ecosystems). This study was, therefore, conducted to bridge the knowledge gap. Chemical analyses were conducted on water, soil, and rice grain samples from different production ecosystems in the Northern and Upper East regions of Ghana. Statistical analysis of the data showed that soil and rice grain arsenic concentrations were significantly higher (P < 0.001) in the Upper East region. In the Northern region, mean cadmium concentration in rice grains from the irrigated lowland fields (0.023±0.003 mg/kg) was significantly higher than in grains from the rainfed fields. All recorded concentrations of rice grain arsenic, cadmium, and lead were, however, within permissible limits, indicating a low risk of dietary exposure. The observed differences in concentrations within and between regions suggest that soil texture and other geogenic factors could influence the potential toxic element status of the rice production ecosystems. Regular monitoring is, therefore, recommended to maintain the safety of Ghana’s locally produced rice for human consumption.
- OPEN ACCESSGenetic testing's increased availability has raised concerns about “genetic discrimination” (GD), where individuals may face unfair treatment, particularly when purchasing personal insurance, because of their genetic characteristics. In 2017, Canada passed the Genetic Non-Discrimination Act (GNDA) to prevent GD. This manuscript reviews post-GNDA life insurance application forms and compares them with pre-2014 application forms to assess the impact of the GNDA on insurance practices in Canada. Based on our comparative assessment, we found that the GNDA has had a modest impact on the practice of life insurers in Canada. Our study also confirms that questions about family history of disease and broadly formulated inquiries are still used on life insurance application forms. Both can, in the absence of clear instructions, lead applicants to disclose protected genetic information.
- OPEN ACCESS
- Emily M. Rubidge,
- Carrie K. Robb,
- Patrick L. Thompson,
- Chris McDougall,
- Karin M. Bodtker,
- Katie S.P. Gale,
- Stephen Ban,
- Kil Hltaanuwaay Tayler Brown,
- Vicki Sahanatien,
- Sachiko Ouchi,
- Sarah K. Friesen,
- Natalie C. Ban,
- Karen L. Hunter,
- Angelica Pena,
- Amber Holdsworth, and
- Rebecca Martone
Marine protected area (MPAs) networks can buffer marine ecosystems from the impacts of climate change by allowing species to redistribute as conditions change and by reducing other stressors. There are, however, few examples where climate change has been considered in MPA network design. In this paper, we assess how climate change considerations were integrated into the design of a newly released MPA network in the Northern Shelf Bioregion in British Columbia, Canada, and then evaluate the resulting network against projected physical and biogeochemical changes and biological responses. We found that representation, replication, and size and spacing recommendations integrated into the design phase were met in most cases. Furthermore, despite varying degrees of projected changes in temperature, dissolved oxygen, and aragonite saturation across the MPA network, suitable habitat for demersal fish species is projected to remain in the network despite some redistribution among sites. We also found that mid-depth MPAs are particularly important for persistence, as fish are projected to move deeper to avoid warming in shallower areas. Our results highlight that a representative MPA network with adequate replication, that incorporates areas of varying climate change trajectory, should buffer against the impacts of climate change. - OPEN ACCESSTitles of scientific papers play a key role in their discovery, and “good” titles engage and recruit readers. Humour is a particularly interesting aspect of title construction, but little is known about whether funny titles boost or limit paper impact. We used a panel of scorers to assess title humour for 2439 papers in ecology and evolution, and measured associations between humour and subsequent citation (self-citation and citation by others). Papers with funnier titles were cited less, but this appears to reflect confounding with paper importance: self-citation data suggest that authors give funnier titles to papers they consider less important. After correction for this, papers with funny titles have significantly higher citation rates (P < 2.2 × 10−16; roughly doubling from lowest to highest humour score)—suggesting that humour recruits readers. We also examined associations between citation rates and other features of titles. Inclusion of acronyms and taxonomic names was associated with lower citation rates, while assertive-statement phrasing and presence of colons, question marks, and political regions were associated with somewhat higher citation rates. Title length had no effect on citation. Our results suggest that scientists can use creativity with titles without having their work condemned to obscurity.
- OPEN ACCESSHuman access to surface water resources in the Northern Great Plains (NGP) is challenged by availability and quality, and ecosystem health objectives for these characteristics have not been well developed. Here, we present a predictive multivariate model using the reference condition approach to inform goals for ecosystem health assessment. Benthic communities and abiotic variables were collected at 280 potential reference sites and 8 test sites, and of these, reference sites with least amount of human activity (n = 83) were classified into three community groups and summary metrics. Discriminant function analysis and cross-validation determined that stream order and ecoregion predicted 68.7% of the sites correctly, thus enabling comparison of sites with unknown condition to reference site groups. We then evaluated metrics through Test Site Analysis and stressor gradient analysis in each biological group. Beetle and amphipod fauna were found to be important for condition assessment in addition to traditional metrics of species richness, abundance, detritivory, Ephemeroptera/Plecoptera/Trichoptera dominance, and assemblage composition. These results provide least disturbed reference condition and ecological insights into land use impacts in the NGP. Ultimately, this model is an effective tool for evaluating biotic condition, enables prioritizing river management strategies, and can quantify the efficacy of mitigation measures.
- OPEN ACCESSProtected areas (PAs) are a key component of most conservation strategies because they are thought to enhance biodiversity value relative to similar habitats in working landscapes. To examine whether PAs in Nova Scotia are functioning to enhance the biodiversity value of the landscapes in which they are embedded, we surveyed breeding bird communities in forested wetlands inside and outside of a large PA during 2018 and 2019. We found significantly higher species richness and diversity at sites in the working landscape relative to those inside the PA. Bird communities from different wetland types inside the PA were distinct from each other and those outside the PA, whereas bird communities at outside sites were homogenized and comprised of more early-successional species. There were numerous species of conservation concern at both inside and outside sites, indicating that both types of sites are playing important conservation roles. Abundances of these key species were driven by a combination of local (e.g., water table depth, herb, and shrub cover) and landscape scale factors (e.g., edge density and human disturbance). The higher abundance of long-distance migrants and insectivores at inside sites suggests PAs are providing critical additional support to key guilds that are in steep decline.
- OPEN ACCESS
- Britt D. Hall,
- Sichen Liu,
- Cameron G.J. Hoggarth,
- Lara M. Bates,
- Stacy A. Boczulak,
- Jamie D. Schmidt, and
- Andrew M. Ireson
Methylmercury concentrations [MeHg] in whole water were measured in 28 prairie wetland ponds in central Saskatchewan between 2006 and 2012. Ponds fell into four land use categories (established grass, recent grass, traditional cultivated, and certified organic cultivated) and two water level patterns (“Mainly Wet” ponds stayed wet at least until October and “Mainly Dry” ponds dried up each summer). Despite similar atmospheric Hg deposition, average [MeHg] and proportion of total Hg that was MeHg (%MeHg) were higher in water from ponds surrounded with established grass or organic farming; this trend may be driven by high [MeHg] at one Organic site. A stronger relationship was observed with water level patterns. Average [MeHg] and %MeHg were significantly higher in Mainly Wet ponds compared to Mainly Dry ponds. Higher [MeHg] in Mainly Wet ponds were correlated with much higher dissolved organic carbon (DOC) and sulfate (SO4−2) concentrations and higher specific UV absorbance of DOC. We suggest that prairie wetland ponds may not fit the accepted paradigm that wetlands with high [SO4−2] show inhibition of Hg methylation. Our work suggests controls such as the chemical nature of DOC or redox fluctuations in hydrologically dynamic systems may be important in determining net [MeHg] in these sites. - OPEN ACCESSLake Winnipeg, Manitoba, is Canada’s second largest commercial inland freshwater fishery, and concern over collapse of the walleye fishery is growing. Molecular techniques have been increasingly used to study responses of wild organisms to environmental and anthropogenic stressors. The present study used transcriptomics to examine the physiology of wild-caught walleye (Sander vitreus (Mitchell, 1818)) across Lake Winnipeg using non-lethal techniques. Gill transcriptomes of walleye sampled from the north and south basins of Lake Winnipeg, and the channel connecting them, exhibited distinct profiles implicating regionally specific biological responses. North basin walleye exhibited transcriptomic responses indicative of exposure to environmental stressors. Transcriptomic patterns suggested a shift to increased reliance on anaerobic metabolism and up-regulation of hypoxia-sensitive genes in north basin fish, possibly representing exposure to low-oxygen conditions. Exposure to environmental stressors may also have driven increases in gene transcripts associated with proteasomal catabolism, DNA repair, molecular chaperones, and ion regulation. North basin fish also exhibited transcriptomic patterns indicative of gill remodeling via regulation of the mTOR pathway, cytoskeleton reorganization, and fatty acid synthesis. Our results highlight the complexity of examining wild fish across environmental gradients but also the potential use of molecular techniques in elucidating organismal sensitivity to local environmental factors.
- OPEN ACCESS
- Travis G. Gerwing,
- Lily Campbell,
- Diana J. Hamilton,
- Myriam A. Barbeau,
- Gregory S. Norris,
- Sarah E. Dudas, and
- Francis Juanes
While trophic and habitat-related abiotic variables (predation, competition, tolerance, etc.) are known to influence community structure in many ecosystems, some systems appear to be only minimally influenced by these variables. Sampling multiple tidal flat communities in northern BC, Canada, we investigated the relative importance of top-down and middle-out (mesopredators) variables, competition for resources (bottom up), and abiotic variables in structuring an infaunal community (invertebrates living in sediment). Similar to previous studies on mudflats in the Bay of Fundy (also at a north temperate latitude), we determined that these variables accounted for a minor (0%–9%) proportion of the observed variation in this infaunal community, suggesting that these variables play a small role in structuring this community. Based on the results of our study and in combination with previous experiments on infaunal recovery patterns post disturbance, we posit that the main factors influencing these infaunal communities likely operate at a scale of sites (kilometres) and(or) plot (metres or less) but not transects (10–100 m within site). Candidate forces structuring these intertidal communities that need future examination include regional species pools and the variables that affect these pools, sediment biogeochemistry, and disturbance/recovery history of a site. The similarity of our Pacific coast findings to those from the north temperate Atlantic coast suggests some similarity in the processes structuring these distinct infaunal communities. - OPEN ACCESSIn some cases, managing an established invasive species may do more harm to an ecosystem than allowing the invader to persist. Given limited resources available to land managers and the realities of conservation triage, we recognized the need for systematic guidance for management decisions made at the “late end” of the invasion curve. We gathered an interdisciplinary group of experts and practitioners to address the question of “under what circumstances is the active management of an established aquatic invasive species warranted?” Our working group identified three key dimensions to this question: (1) the efficacy of available management options; (2) the net benefits of management actions weighed against the null scenario of no control; and (3) the socio-ecological context that defines management goals, a manager’s ability to achieve said goals, and perceptions of management outcomes. These considerations were used to structure a consensus decision tree that supports a multi-criteria approach to decision-making. Our approach promotes interdisciplinarity and systems thinking and emphasizes the need to consider costs and benefits comprehensively, for example by considering the persistence or reversibility of impacts from both the invasive species and from efforts to suppress or eradicate it.
- OPEN ACCESSBenthic macroinvertebrate communities, which include unionid freshwater mussels, enhance the health of river ecosystems. Human impacts have driven declines within freshwater mussel communities and due to their complex life cycles, mussel recovery efforts are complex. In Canada, conservation of imperiled species has focused on biodiversity hotspots such as the Sydenham River in the Laurentian Great Lakes Basin. In practice, species conservation and habitat monitoring are siloed between federal agencies and local conservation authorities, limiting the potential for alignment of conservation policy and practice. Here we bring together federal, local, and our own survey data to explore patterns of co-occurrences between mussel species and other macroinvertebrate taxa to explore the extent to which knowledge of one benthic community informs the other. Mussel communities (species richness, community composition) differed between sites where imperiled mussel species were present and/or absent. Benthic macroinvertebrate metrics (e.g., family richness, percent Ephemeroptera, Plecoptera, and Trichoptera taxa) and specific indicator taxa were correlated with mussel species richness and the presence of imperiled mussel species. We show that benthic macroinvertebrate diversity indicators provided insight into imperiled species occurrences that warrant further investigation. These findings underscore support for coordinated watershed monitoring efforts and could be crucial for more successful freshwater mussel conservation.
- OPEN ACCESS
- Alexandra Langwieder,
- Angela Coxon,
- Natasha Louttit,
- Stephanie Varty,
- Felix Boulanger,
- Sanford Diamond,
- John Lameboy,
- Anderson Jolly,
- George Natawapineskum,
- Derek Okimaw, and
- Murray M. Humphries
Wildlife conservation is informed by detailed understanding of species demographics, habitat use, and interactions with environmental drivers. Challenges to collecting this information, particularly in remote places and on widely ranging species, can contribute to data deficiencies that detract from conservation status assessment and the effectiveness of management actions. Polar bears in James Bay face rapidly changing environmental conditions at the southern edge of their global range, but studying their ecology has been limited by community concerns about the methods typically used in polar bear research. Using a community-led and non-invasive approach, we deployed hair snare and camera trap sampling stations across 400 km of the Eeyou Marine Region in eastern James Bay. Stations collected >100 hair samples and thousands of photographs in one eight-week period that allowed for a novel investigation of this population’s distribution and body condition during the ice-free season. Polar bears were in average to above average body condition, and model selection of detections at stations revealed distance to mainland as a significant predictor of polar bear presence. Given its high potential, we suggest community-based monitoring using this method become a standard protocol to expand the scope and local leadership of polar bear research across the North. - OPEN ACCESSAnimal populations take advantage of environmental heterogeneity to partition themselves into microhabitat niches. Such partitioning plays an important role in regulating interspecific competition and community structure by allowing multiple species to coexist. Atlantic Canada has many small coastal staging sites that host southbound migrant shorebirds. However, most shorebird studies in the region have been focused on larger sites in the Bay of Fundy, resulting in limited knowledge about staging ecology at these small sites, which often host more diverse shorebird assemblages. We examined niche partitioning by shorebirds on the Northumberland Strait, New Brunswick, Canada, to better understand how small coastal staging sites support diverse shorebird populations. We found evidence of partitioning on three niche dimensions: space, foraging behaviour, and diet. Most species specialized in at least one dimension, with foraging constraints based on bill morphology and habitat access based on species size likely driving segregation. Environmental heterogeneity at sites on the Northumberland Strait created multiple dimensions for segregation and fulfilled the niche requirements of diverse shorebird species during migratory staging. These findings broaden our understanding of staging ecology of multispecies flocks and suggest that conservation of small coastal sites is important for success of migratory shorebirds in Atlantic Canada.
- OPEN ACCESSThe American common eider (Somateria mollissima dresseri) is a colonially nesting sea duck breeding on islands in the coastal regions of Atlantic Canada. Declines in colony size have been pronounced in some parts of its range, notably in Nova Scotia, and may be attributable to a variety of interconnected factors including changes in habitat conditions. Using surveys collected two decades apart, we compared nesting habitat types, availability, and use by breeding eiders on 16 islands that supported >1600 eider nests in 1992–1993, but 830 nests in 2013. While general patterns of eider nesting habitat use remained consistent (e.g., nesting preferences exhibited for Low Shrubland and Grassland habitats, and avoidance of forest or beach habitats), overall vegetation cover declined, but relative habitat changes were inconsistent across islands. Three of the islands with the greatest change in vegetation had cormorant (Phalacrocorax spp.) colonies in 2013 that were not there in the earlier years. We suggest that changes in vegetation, in some cases facilitated by cormorant colony formation, influenced susceptibility of nesting females to predators, and these interconnected factors may be contributing to local population declines.
- OPEN ACCESSInvasive species are a leading cause of biodiversity loss and species extinctions across ecosystems on a global scale. The historical and ongoing focus on single-species management of invasive species and species at risk contributes to inefficiencies in management strategies that present an obstacle to achieving desired outcomes. A holistic approach that consolidates and maps linkages between the broader collective of invasive species and species at risk in an area provides a more appropriate entry point for issue-based, rather than species-based, management planning. We present a case study of this approach from British Columbia, Canada, which synthesized the identity, mechanisms of impact, mechanisms of spread, and magnitude of impacts across 782 unique pairs of invasive species and federally listed species at risk, based on a literature review of species at risk documentation. The resulting dataset was used to summarize the nature of interactions across species pairs and taxonomic groups to help guide the development of invasive species response strategies that make the best use of limited management resources. As species invasions and extinctions become increasingly interconnected, holistic approaches rooted in cumulative effects assessment and ecosystem-based management can provide a stronger foundation for reducing or mitigating this growing threat.
- OPEN ACCESS
- Christoph M. Deeg,
- Albina N. Kanzeparova,
- Alexei A. Somov,
- Svetlana Esenkulova,
- Emiliano Di Cicco,
- Karia H. Kaukinen,
- Amy Tabata,
- Tobi J. Ming,
- Shaorong Li,
- Gideon Mordecai,
- Angela Schulze, and
- Kristina M. Miller
Salmon are keystone species across the North Pacific, supporting ecosystems, commercial opportunities, and cultural identity. Nevertheless, many wild salmon stocks have experienced significant declines. Salmon restoration efforts focus on fresh and coastal waters, but little is known about the open ocean environment. Here we use high throughput RT-qPCR tools to provide the first report on the health, condition, and infection profile of coho, chum, pink, and sockeye salmon in the Gulf of Alaska during the 2019 winter. We found lower infectious agent number, diversity, and burden compared with coastal British Columbia in all species except coho, which exhibited elevated stock-specific infection profiles. We identified Loma sp. and Ichthyophonus hoferi as key pathogens, suggesting transmission in the open ocean. Reduced prey availability, potentially linked to change in ocean conditions due to an El Niño event, correlated with energetic deficits and immunosuppression in salmon. Immunosuppressed individuals showed higher relative infection burden and higher prevalence of opportunistic pathogens. We highlight the cumulative effects of infection and environmental stressors on overwintering salmon, establishing a baseline to document the impacts of a changing ocean on salmon. - OPEN ACCESSForested vernal pools serve an integral role in the recruitment of amphibians in glaciated northeastern North America. In south-central Ontario, vernal pools exist in relatively unimpacted forest networks, but the amphibian communities face uncertain challenges from anthropogenic-induced climate change. We surveyed amphibian larvae and collected measurements of habitat characteristics from vernal pools to collect baseline information on amphibian community structure and species–habitat relationships. Amphibian communities were influenced by hydroperiod length and canopy openness, and the relative abundances of early breeding amphibians were affected by changes in the structure of vegetation communities within pools. Our study suggests that, even across moderate ranges of breeding habitat characteristics, the structure of amphibian communities is dynamic. With anthropogenic-induced climate change leading to more drought-prone summers, the conservation of intact forests that support diverse wetland assemblages will be a necessary component of future legislation.
- OPEN ACCESS
- Arthur L. Bass,
- Andrew W. Bateman,
- Brendan M. Connors,
- Benjamin A. Staton,
- Eric B. Rondeau,
- Gideon J. Mordecai,
- Amy K. Teffer,
- Karia H. Kaukinen,
- Shaorong Li,
- Amy M. Tabata,
- David A. Patterson,
- Scott G. Hinch, and
- Kristina M. Miller
Recent decades have seen an increased appreciation for the role infectious diseases can play in mass mortality events across a diversity of marine taxa. At the same time many Pacific salmon populations have declined in abundance as a result of reduced marine survival. However, few studies have explicitly considered the potential role pathogens could play in these declines. Using a multi-year dataset spanning 59 pathogen taxa in Chinook and Coho salmon sampled along the British Columbia coast, we carried out an exploratory analysis to quantify evidence for associations between pathogen prevalence and cohort survival and between pathogen load and body condition. While a variety of pathogens had moderate to strong negative correlations with body condition or survival for one host species in one season, we found that Tenacibaculum maritimum and Piscine orthoreovirus had consistently negative associations with body condition in both host species and seasons and were negatively associated with survival for Chinook salmon collected in the fall and winter. Our analyses, which offer the most comprehensive examination of associations between pathogen prevalence and Pacific salmon survival to date, suggest that pathogens in Pacific salmon warrant further attention, especially those whose distribution and abundance may be influenced by anthropogenic stressors. - OPEN ACCESSCyanobacterial blooms and their toxigenic potential threaten freshwater resources worldwide. In Atlantic Canada, despite an increase of cyanobacterial blooms in the last decade, little is known about the toxigenic potential and the taxonomic affiliation of bloom-forming cyanobacteria. In this study, we employed polymerase chain reaction (PCR) and metagenomic approaches to assess the potential for cyanotoxin and other bioactive metabolite production in Harvey Lake (oligotrophic) and Washademoak Lake (mesotrophic) in New Brunswick, Canada, during summer and early fall months. The PCR survey detected the potential for microcystin (hepatotoxin) and anatoxin-a (neurotoxin) production in both lakes, despite a cyanobacterial bloom only being visible in Washademoak. Genus-specific PCR associated microcystin production potential with the presence of Microcystis in both lakes. The metagenomic strategy provided insight into temporal variations in the microbial communities of both lakes. It also permitted the recovery of a near-complete Microcystis aeruginosa genome with the genetic complement to produce microcystin and other bioactive metabolites such as piricyclamide, micropeptin/cyanopeptolin, and aeruginosin. Our approaches demonstrate the potential for production of a diverse complement of bioactive compounds and establish important baseline data for future studies of understudied lakes, which are frequently affected by cyanobacterial blooms.
- OPEN ACCESSOvergrazing of habitat-forming kelps by sea urchins is reshaping reef seascapes in many temperate regions. Loss of kelp, in particular as a food source, may alter individual consumer physiology, which in turn may impair their ability to respond to climate warming. Here, we measured the temperature dependence of absolute and mass-independent oxygen consumption (M˙O2) using two different exposure protocols (acute exposure and temperature “ramping”), as proxies of realized physiology, between green sea urchin (Strongylocentrotus droebachiensis) populations from neighbouring barren and kelp habitats. Sea urchins from kelp habitats consumed 8%–78% more oxygen than sea urchins from barrens (across the range of temperatures tested (4–32 °C)) and had higher maximum M˙O2 values (by 26%). This was in part because kelp urchins typically had greater body masses. However, higher mass-independent M˙O2 values of kelp urchins suggest metabolic plasticity in response to habitat per se. In addition, the M˙O2 of sea urchins from kelp habitats was less sensitive to increases in temperature. We conclude that sea urchins from barren and kelp habitats of comparable body mass represent different energetic units. This highlights that habitat type can drive population-level variation that may shape urchins activities and environmental impact. Such variation should be integrated into energy-based models.
- OPEN ACCESSCumulative human impact analysis is a promising management tool to estimate the impacts of stressors on ecosystems caused by multiple human activities. However, connecting cumulative impact scores to actual ecosystem change at appropriate spatial scales remains challenging. Here, we calculated cumulative effects (CE) scores for 187 seagrass beds in Atlantic Canada that accounts for both bay-scale and local-scale anthropogenic activities. We then developed a CE threshold to evaluate where degradation of seagrass beds from multiple human activities is more likely. Overall, the CE score was the best predictor of human impacts for seagrass beds. Locations with high watershed land alteration and nitrogen loading had the highest CE scores; however, we also identified seagrass beds with high CE scores in regions characterized by generally low levels of human activities. Forty-nine seagrass beds exceeded the CE threshold and, of these, 86% had CE scores that were influenced by three or more stressors that cumulatively amounted to a large score. This CE threshold approach can provide a simplified metric to identify areas where management of cumulative effects should be prioritized and further highlights the need to consider multiple human activities when assessing anthropogenic impacts to coastal habitats.
- OPEN ACCESSThe CLOCK gene is a core component of the circadian clock and regulates various aspects of metabolism. Therefore, any variation that affects the function/expression of the CLOCK gene may contribute to the manifestation of metabolic disorders such as obesity. This study investigated whether the CLOCK variants rs4864548 and rs6843722 are associated with obesity and related traits in Pakistanis. A total of 306 overweight/obese cases and 306 age- and gender-matched control subjects were recruited (males 336 and females 276, age range 12–63 years). Anthropometric and metabolic parameters were taken by standard procedures and biochemical analyses, respectively. Behavior-related information was collected with a questionnaire. The genotypes of the variants were determined by allelic discrimination Taqman assays. Both variants were found to have a significant association with overweight/obesity according to the over-dominant model. The rs4864548 and rs6843722 were observed to escalate the risk of overweight/obesity by 1.611 (p = 0.004) and 1.657 (p = 0.002) times, respectively. These variants were also seen to be significantly associated with various other adiposity-related anthropometric parameters (p < 0.05). However, no association of both variants with metabolic and behavioral parameters was observed (p > 0.05). Thus, these variants may contribute to increasing the risk of overweight/obesity and related anthropometric traits in Pakistanis.
- OPEN ACCESS
SARS-CoV-2 detection from the built environment and wastewater and its use for hospital surveillance
- Aaron Hinz,
- Lydia Xing,
- Evgueni Doukhanine,
- Laura A. Hug,
- Rees Kassen,
- Banu Ormeci,
- Richard J. Kibbee,
- Alex Wong,
- Derek MacFadden, and
- Caroline Nott
Patients hospitalized with SARS-CoV-2 infections are major contributors to morbidity and mortality in health care settings. Our understanding of the distribution of this virus in the built health care environment and wastewater, and relationship to disease burden, is limited. We performed a prospective multi-center study of environmental sampling of SARS-CoV-2 from hospital surfaces and wastewater and evaluated their relationships with regional and hospital COVID-19 burden. We validated a qPCR-based approach to surface sampling and collected swab samples weekly from different locations and surfaces across two tertiary care hospital campuses for a 10-week period during the pandemic, along with wastewater samples. Over the 10-week period, 963 swab samples were collected and analyzed. We found 61 (6%) swabs positive for SARS-CoV-2, with the majority of these (n = 51) originating from floor samples. Wards that actively managed patients with COVID-19 had the highest frequency of positive samples. Detection frequency in built environment swabs was significantly associated with active cases in the hospital throughout the study. Wastewater viral signal changes appeared to predate change in case burden. Our results indicate that environment sampling for SARS-CoV-2, in particular from floors, may offer a unique and resolved approach to surveillance of COVID-19. - OPEN ACCESSCoastal salt marshes provide many ecosystem services; however, little is known of the biology of decomposer taxa in these systems. This study employed aboveground and belowground litterbags to characterize the fungal and mite communities associated with the dominant salt marsh grass, Sporobolus pumilus, in the Minas Basin, Nova Scotia. Decomposition rates of aboveground and belowground tissues and environmental variables were quantified to contextualize temporal patterns in community composition. Aboveground litterbag mass loss peaked in July and decreased consistently over succeeding months, which positively correlated with fungal richness. Fungal and mite richness displayed inverse relationships over time, with mites gradually increasing in diversity before peaking in November, suggesting the presence of a complex detrital network where mites and fungi respond to different and possibly unrelated environmental cues. This study offers a first look at temporal community dynamics of two neglected groups of decomposers associated with S. pumilus in Canada.
- OPEN ACCESSThe lake whitefish (Coregonus clupeaformis) is a commercially valuable freshwater species with a broad distribution in North America. Some phylogeographic work has been done on this species, but little is known about genetic population subdivision among populations of the widely dispersed Mississippian lineage. We used 3,173 single nucleotide polymorphisms in 508 lake whitefish from 22 different lakes to examine population structure across central Canada and the United States. Bayesian clustering, ordination, and fixation indices identified population subdivision that largely reflected geographic distance and hydrological connectivity, with greater differentiation between lakes that are farther apart. Population subdivision was hierarchical, with greater differentiation between Canadian provinces and less differentiation based on river basins within provincial boundaries. Interestingly, isolation by distance alone was not sufficient to account for all of the observed genetic differentiation among populations. We conclude that important components of lake whitefish genetic diversity are present at different spatial scales, and that populations within the Mississippian lineage have differentiated widely across their range.
- OPEN ACCESS
- Isadora Louise Alves da Costa Ribeiro Quintans,
- Juliana Alves da Costa Ribeiro Souza, and
- Michael K Deyholos
Fusarium oxysporum f. sp. lini and Septoria linicola are causes of fusarium wilt and pasmo in flax (Linum usitatissimum). Members of a third fungal genus, Alternaria spp., have also been found in fiber and linseed varieties of flax, and are a source of post-harvest spoilage and mycotoxins in a wide range of crops. We performed a microdilution assay and calculated the median effective concentration (EC50) to compare the potency of cyclolinopeptides (CLPs), two polyamines (spermidine and spermine), and the fungicide carbendazimin in the control of three fungi that have potential pathogenic activity (F. oxysporum, S. linicola, and Alternaria spp), of which the first two are particulary significant causes of disease in flax. For carbendazim, all EC50 values were <0.6 μg/mL. The observed EC50 ranged from 111 to 340 μg/mL for a mixture of six unique CLPs, 109 to 778 μg/mL for spermine, and 21 to 272 μg/mL for spermidine. Spermidine was most effective against Alternaria sp., with an EC50 of 21 μg/mL. The results presented here showed that polyamines and CLPs possess limited antifungal activities against several fungi, with spermidines the most effective naturally occurring compound tested. Our findings do not support the hypothesis that CLPs act as potent antifungals against the three species of pathogens tested. - OPEN ACCESS
- Jessica Currie,
- Joseph B. Burant,
- Valentina Marconi,
- Stephanie A. Blain,
- Sandra Emry,
- Katherine Hébert,
- Garland Xie,
- Nikki A. Moore,
- Xueqi Wang,
- Andrea Brown,
- Lara Grevstad,
- Louise McRae,
- Stefano Mezzini,
- Patrick Pata, and
- Robin Freeman
To effectively combat the biodiversity crisis, we need ambitious targets and reliable indicators to accurately track trends and measure conservation impact. In Canada, the Living Planet Index (LPI) has been adapted to produce a national indicator by both World Wildlife Fund-Canada (Canadian Living Planet Index; C-LPI) and Environment and Climate Change Canada (Canadian Species Index) to provide insight into the status of Canadian wildlife, by evaluating temporal trends in vertebrate population abundance. The indicator includes data for just over 50% of Canadian vertebrate species. To assess whether the current dataset is representative of the distribution of life history characteristics of Canadian wildlife, we analyzed the representation of species-specific biotic variables (i.e., body size, trophic level, lifespan) for vertebrates within the C-LPI compared to native vertebrates lacking LPI data. Generally, there was considerable overlap in the distribution of biotic variables for species in the C-LPI compared to native Canadian vertebrate species lacking LPI data. Nevertheless, some differences among distributions were found, driven in large part by discrepancy in the representation of fishes—where the C-LPI included larger-bodied and longer-lived species. We provide recommendations for targeted data collection and additional analyses to further strengthen the applicability, accuracy, and representativity of biodiversity indicators. - OPEN ACCESS
- Jessica Garzke,
- Ian Forster,
- Sean C. Godwin,
- Brett T. Johnson,
- Martin Krkošek,
- Natalie Mahara,
- Evgeny A. Pakhomov,
- Luke A. Rogers, and
- Brian P.V. Hunt
Migrating marine taxa encounter diverse habitats that differ environmentally and in foraging conditions over a range of spatial scales. We examined body (RNA/DNA, length-weight residuals) and nutritional (fatty acid composition) condition of juvenile sockeye salmon (Oncorhynchus nerka) in British Columbia, while migrating through oceanographically variable waters. Fish were sampled in the stratified northern Strait of Georgia (NSoG); the highly mixed Johnstone Strait (JS); and the transitional zone of Queen Charlotte Strait (QCS). In 2015, body and nutritional condition were high in the NSoG but rapidly declined to reach lowest levels in JS where prey availability was low, before showing signs of compensatory growth in QCS. In 2016, juvenile salmon had significantly lower condition in the NSoG than in 2015, although zooplankton biomass was similar, condition remained low in JS, and no compensatory growth was observed in QCS. We provide evidence that differences in juvenile salmon condition between the two years were due to changes in the food quality available to juvenile fish. We propose that existing hypotheses about fish survival need to be extended to incorporate food quality in addition to quantity to understand changes in fish condition and survival between years. - OPEN ACCESS
- Alexandra M. Anderson,
- Catherine B. Jardine,
- J.R. Zimmerling,
- Erin F. Baerwald, and
- Christina M. Davy
Understanding the relationship between the height of wind turbines and wildlife fatalities is important for informing and mitigating wildlife collisions as ever taller and denser arrays of wind turbines are erected across the landscape. We examined relationships between turbine height and fatalities of bats and swallows at 811 turbines in Ontario, Canada, ranging from 119 to 186 m tall. We accounted for cut-in speeds, operational mitigation, and taller turbines projecting carcasses farther from the turbine base than shorter turbines. Fatalities of hoary bats (Lasiurus cinereus Palisot de Beauvois, 1796), silver-haired bats (Lasionycteris noctivagans Le Conte, 1831), and big brown bats (Eptesicus fuscus Palisot de Beauvois, 1796) increased with increased maximum blade height of turbines. In contrast, fatalities of little brown bat (Myotis lucifugus Le Conte, 1831) and eastern red bat (Lasiurus borealis Müller, 1776) decreased with increased turbine height. Fatalities of purple martins (Progne subis Linnaeus, 1758) and tree swallows (Tachycineta bicolor Vieillot, 1808) were higher at taller turbines than shorter turbines. However, fatalities of cliff swallow (Petrochelidon pyrrhonota Vieillot, 1817) and barn swallow (Hirundo rustica Linnaeus, 1758) were not associated with turbine height. Our results suggest that varying flight height among species may be one factor affecting collision risk. - OPEN ACCESSRanaviruses are large nucleocytoplasmic DNA viruses that infect ectothermic vertebrates. Here we report the results of a scientometric analysis of the field of ranavirology for the last 10 years. Using bibliometric tools we analyse trends, identify top publications and journals, and visualise the ranavirus collaboration landscape. The Web of Science core collection contains 545 ranavirus-related publications from 2010 to 2019, with more publications produced every year and a total of 6830 citations. Research output is primarily driven by the United States and People’s Republic of China, who together account for more than 60% of ranavirus publications. We also observed a positive correlation between the average number of co-authors on ranavirus publications and the year of publication, indicating that overall collaboration is increasing. A keyword analysis of ranavirus publications from 2010 to 2019 reveals several areas of research interest including; ecology, immunology, virology/molecular biology, genetics, ichthyology, and herpetology. While ranavirus research is conducted globally, relatively few publications have co-authors from both European and Asian countries, possibly because closer countries (geographical distance) are more likely to share co-authors. To this end, efforts should be made to foster collaborations across geopolitical and cultural boundaries, especially between countries with shared research interests as ultimately, understanding global pathogens, like ranaviruses, will require global collaboration.
- OPEN ACCESS
- Martin Krkošek,
- Madeline Jarvis-Cross,
- Kiran Wadhawan,
- Isha Berry,
- Jean-Paul R. Soucy,
- Korryn Bodner,
- Ariel Greiner,
- Leila Krichel,
- Stephanie Penk,
- Dylan Shea,
- Juan S. Vargas Soto,
- Ed W. Tekwa,
- Nicole Mideo, and
- Péter K. Molnár
This study empirically quantifies dynamics of SARS-CoV-2 establishment and early spread in Canada. We developed a transmission model that was simulation tested and fitted in a Bayesian framework to timeseries of new cases per day prior to physical distancing interventions. A hierarchical version was fitted to all provinces simultaneously to obtain average estimates for Canada. Across scenarios of a latent period of 2–4 d and an infectious period of 5–9 d, the R0 estimate for Canada ranges from a minimum of 3.0 (95% CI: 2.3–3.9) to a maximum of 5.3 (95% CI: 3.9–7.1). Among provinces, the estimated commencement of community transmission ranged from 3 d before to 50 d after the first reported case and from 2 to 25 d before the first reports of community transmission. Among parameter scenarios and provinces, the median reduction in transmission needed to obtain R0 < 1 ranged from 46% (95% CI: 43%–48%) to 89% (95% CI: 88%–90%). Our results indicate that local epidemics of SARS-CoV-2 in Canada entail high levels of stochasticity, contagiousness, and observation delay, which facilitates rapid undetected spread and requires comprehensive testing and contact tracing for its containment. - OPEN ACCESSThis research explores the potential hydroponic systems have for contributing to climate mitigation in fodder agriculture. Using British Columbia (BC) and Alberta as case studies, the study compares greenhouse gas (GHG) emissions and carbon sequestration potential of hydroponically grown sprouted barley fodder to conventional barley grain fodder. GHG emissions were examined through scenarios that assumed Alberta to be the main barley producer, while exploring different situations of BC and Alberta as consumers, distributed/centralized hydroponic systems, and renewable/nonrenewable energy. Carbon sequestration opportunities were examined through scenarios that explored the land sparing potential of transitioning from conventional to hydroponic barley and shifts from tillage to no-tillage practices. Sensitivity analyses were done to examine how changes in hydroponic seed-to-fodder output and energy consumption affect the systems’ climate mitigation potential. The results indicated that incorporating hydroponic systems into barley production has the potential to reduce GHG emissions, given seed-to-fodder output and energy consumption are maintained at certain levels and the systems are powered by renewable energy. Results also showed that hydroponic farming can provide greater carbon sequestration opportunities than simply shifting to no-tillage farming. The research indicates that hydroponic fodder farming could contribute to climate mitigation objectives if complemented with effective energy and land use policies.
- OPEN ACCESSRoad salt runoff is a leading cause of secondary freshwater salinization in north temperate climates. Increased chloride concentrations in freshwater can be toxic and lead to changes in organismal behavior, lethality, biotic homogenization, and altered food webs. High chloride concentrations have been reported for winter months in urban centers, as road density is highest in cities. However, summer chloride conditions are not typically studied as road salt is not actively applied outside of winter months, yet summer is when many taxa reproduce and are most sensitive to chloride. In our study, we test the spatial variability of summer chloride conditions across four watersheds in Toronto, Canada. We find 89% of 214 sampled sites exceeded the federal chronic exposure guidelines for chloride, and 13% exceeded the federal acute guidelines. Through a model linking concentration to cumulative proportion of impacted species, we estimate 34% of sites show in excess of one-quarter of all species may be impacted by their site-specific chloride concentrations, with up to two-thirds of species impacted at some sites. Our results suggest that even presumed low seasons for chloride show concentrations sufficient to cause significant negative impacts to aquatic communities.
- OPEN ACCESS
- Ashley L. Cooper,
- Cassandra Carter,
- Hana McLeod,
- Marie Wright,
- Prithika Sritharan,
- Sandeep Tamber,
- Alex Wong,
- Catherine D. Carrillo, and
- Burton W. Blais
Bacterial carbapenem resistance is a major public health concern since these antimicrobials are often the last resort to treat serious human infections. To evaluate methodologies for detection of carbapenem resistance, carbapenem-tolerant bacteria were isolated from wastewater treatment plants in Toronto, Ottawa, and Arnprior, Ontario. A total of 135 carbapenem-tolerant bacteria were recovered. Polymerase chain reaction (PCR) indicated the presence of carbapenem hydrolysing enzymes KPC (n = 10), GES (n = 5), VIM (n = 7), and IMP (n = 1), and β-lactamases TEM (n = 7), PER (n = 1), and OXA-variants (n = 16). A subset of 46 isolates were sequenced and analysed using ResFinder and CARD-RGI. Both programs detected carbapenem resistance genes in 35 sequenced isolates and antimicrobial resistance genes (ARGs) conferring resistance to multiple class of other antibiotics. Where β-lactamase resistance genes were not initially identified, lowering the thresholds for ARG detection enabled identification of closely related β-lactamases. However, no known carbapenem resistance genes were found in seven sequenced Pseudomonas spp. isolates. Also of note was a multi-drug-resistant Klebsiella pneumoniae isolate from Ottawa, which harboured resistance to seven antimicrobial classes including β-lactams. These results highlight the diversity of genes encoding carbapenem resistance in Ontario and the utility of whole genome sequencing over PCR for ARG detection where resistance may result from an assortment of genes. - OPEN ACCESS
- Leonardo B. Custode,
- Matthew M. Guzzo,
- Natasha Bush,
- Claire Ewing,
- Michael Procko,
- Samantha M. Knight,
- Marie-Michele Rousseau-Clair, and
- D. Ryan Norris
Nongovernmental organizations contribute to the securement and management of protected areas, but it is not well known how their lands compare to government protected areas or the effectiveness of different land acquisition strategies. Using data from the International Union for Conservation of Nature and BirdLife International, we estimated total and at-risk terrestrial native vertebrate species richness in southern Canada among (i) private protected areas secured by the Nature Conservancy of Canada (NCC), government protected areas, and randomly sampled land; (ii) conservation agreements and fee simple (directly acquired) NCC properties; and (iii) purchased or donated fee simple properties. Controlling for property size and ecoregion, NCC protected areas were predicted to be in areas with 6% and 13% more total and at-risk species than randomly sampled land and 4% and 6% more total and at-risk species than government protected areas. Within NCC protected areas, conservation agreements were predicted to be in areas with 2% and 4% more total and at-risk species than fee simple properties, but purchased properties had similar numbers of total and at-risk species as donated properties. Although we caution that diversity estimates were based on course-grained range maps, our findings suggest that private protected areas are important in conserving biodiversity. - OPEN ACCESSLarge-scale monitoring is used to track population trends for many ecologically and economically important wildlife species. Often, population monitoring involves professional staff travelling to collect data (i.e., conventional monitoring) or in efforts to reduce monitoring costs, by engaging volunteers (i.e., community science). Although many studies have discussed the advantages and disadvantages of conventional vs. community science monitoring, few have made direct, quantitative comparisons between these two approaches. We compared data quality and financial costs between contemporaneous and overlapping conventional and community science programs for monitoring a major forest pest, the spruce budworm (Choristoneura fumiferanae Clem.). Although community science trapping sites were clumped around urban areas, abundance estimates from the programs were strongly spatially correlated. However, annual program expenditures were nearly four times lower in the community science versus the conventional program. We modelled a hypothetical hybrid model of the two programs, which provided full spatial coverage and potentially the same data, but at half the cost of the conventional program and with the added opportunity for public engagement. Our study provides a unique quantitative analysis of merits and costs of conventional versus community science monitoring. Our study offers insights on how to assess wildlife monitoring programs where multiple approaches exist.
- OPEN ACCESSPost-transcriptional regulators such as microRNAs are emerging as conserved regulators of innate antiviral immunity in vertebrates, yet their roles in amphibian antiviral responses remain uncharacterized. We profiled changes in microRNA expressions in the Xenopus laevis skin epithelial-like cell line Xela DS2 in response to poly(I:C)—an analogue of viral double-stranded RNA and inducer of type I interferons—or frog virus 3 (FV3), an immunoevasive virus associated with amphibian mortality events. Small RNA libraries generated from untreated, poly(I:C)-treated, and FV3-infected cells were sequenced. We detected 136 known X. laevis microRNAs and discovered 133 novel X. laevis microRNAs. Sixty-five microRNAs were differentially expressed in response to poly(I:C), many of which were predicted to target regulators of antiviral pathways such as cGAS-STING, RIG-I/MDA-5, TLR signaling, and type I interferon signaling, as well as products of these pathways (NF-ĸB-induced and interferon-stimulated genes). In contrast, only 49 microRNAs were altered by FV3 infection, fewer of which were predicted to interact with antiviral pathways. Interestingly, poly(I:C) treatment or FV3 infection downregulated transcripts encoding factors of the host microRNA biogenesis pathway. Our study is the first to suggest that host microRNAs regulate innate antiviral immunity in frogs and sheds light on microRNA-mediated mechanisms of immunoevasion by FV3.
- OPEN ACCESS
- Shawn R. Craik,
- Rodger D. Titman,
- Anna M. Calvert,
- Gregory J. Robertson,
- Mark L. Mallory, and
- Sarah E. Gutowsky
The addition of eggs to a nest by a conspecific is known for approximately 250 bird species. Understanding the evolution of conspecific brood parasitism (CBP) requires assessment of fitness consequences to the egg recipient (host). We addressed host traits and the effects of CBP on future reproduction (i.e., annual survival) and hatching success of hosts by following the nesting of 206 red-breasted mergansers (Mergus serrator) for a colony in which an average of 41% of nests was parasitized annually. Each host was tracked for ≥2 seasons and up to seven seasons. The proportion of a host’s nesting attempts that was parasitized averaged 43% and varied considerably across individuals (range 0%–100%). Probability of parasitism, however, was not repeatable across a host’s nests. Rather, rates of CBP throughout a host’s lifetime increased with earlier dates of nest initiation. CBP had no effect on annual survival of a host. Hatching success throughout a host’s lifetime declined with a greater number of foreign eggs added to the individual’s nests. This study revealed that there may be measurable costs of CBP to lifetime reproductive success in red-breasted mergansers, although our observations suggest that costs to hosts are limited to the most heavily parasitized clutches. - OPEN ACCESS
An analysis of threats and factors that predict trends in Canadian vertebrates designated as at-risk
The identification of factors that predict trends in population abundance is critical to formulate successful conservation strategies. Here, we explore population trends of Canadian vertebrates assessed as “at-risk” by the Committee on the Status of Endangered Wildlife in Canada and the threats affecting these trends using data from the Canadian Living Planet Index. We investigate how threat profiles—the combination of threats for a given species—vary among species and taxonomic groups. We then investigate threat profile as a predictor of temporal trends—both exclusively and in combination with additional biotic and abiotic factors. Species had 5.06 (±2.77) threats listed on average, and biological resource use (BRU) was the most frequently cited. Our analysis also revealed an association between taxonomic group and population trends, as measured by the proportion of annual increases (years with a positive interannual change). By contrast, the predictive power of threat profile was poor. This analysis yielded some useful insight for conservation action, particularly the prioritization of abating BRU. However, the predictive models were not as meaningful as originally anticipated. We provide recommendations on methodological improvements to advance the understanding of factors that predict trends in population abundance for prioritizing conservation action. - OPEN ACCESSHarvest records suggest that the abundance of bobcats (Lynx rufus) has increased and the leading edge of their distribution has spread northward, while the trailing edge of the Canada lynx (Lynx canadensis) range has contracted in Ontario, Canada. There has been a debate about whether these closely related felids might compete in areas of sympatry, but there is little research on sympatric populations of bobcat and lynx. Both species are found on the north shore of Lake Huron in Ontario, Canada, which provided an opportunity to investigate their spatial patterns and habitat use. We surveyed snowmobile routes for snow tracks over three winters and estimated probability of occupancy for the two felid species while accounting for detectability. Bobcat and lynx tracks were never found on the same survey route. Bobcat occupancy increased with habitat heterogeneity, whereas lynx occupancy increased with homogeneity. Our results fit with the common assumption of the generalist and specialist natures of bobcat and lynx, respectively. Our findings suggest that bobcats invaded former lynx territory after these areas became vacant. The story of the bobcat and the lynx is one of the loss of a unique, boreal specialist due to anthropogenic change, and eventual replacement by an adaptable generalist.
- OPEN ACCESSShale-gas production could impact freshwater quality through contamination of the physical and chemical habitat (e.g., fracturing fluids, untreated or treated effluent) or development-related impacts. Despite environmental concerns, information is lacking to support biomonitoring as a diagnostic tool to assess impacts of shale-gas production. We characterized water quality and biota in areas of high shale gas potential (Early Carboniferous bedrock in New Brunswick, Canada) and surrounding geologic areas, and we assessed patterns in benthic macroinvertebrate (BMI) and fish assemblages. Early Carboniferous stations differed primarily based on water chemistry, and BMI were associated with a gradient in conductivity and temperature across geologic classes. Concordance analysis indicated similar classification of stations by both organism groups, though fish were more related to turbidity and nutrients. Concordance among fish and BMI was strongest at high conductivity, Early Carboniferous stations. These results suggest that geology plays a strong role in driving abiotic habitats and biotic communities of streams, even at small spatial scales. Furthermore, they suggest BMI and fish can provide complementary information for biomonitoring in shale-gas development areas, with BMI responding to increased ion concentrations from surface water contamination, and fish responding to changes in nutrients and turbidity resulting from development.
- OPEN ACCESS
- R. Drew Carleton,
- Emily Owens,
- Holly Blaquière,
- Stéphane Bourassa,
- Joseph J. Bowden,
- Jean-Noël Candau,
- Ian DeMerchant,
- Sara Edwards,
- Allyson Heustis,
- Patrick M.A. James,
- Alison M. Kanoti,
- Chris J.K. MacQuarrie,
- Véronique Martel,
- Eric R.D. Moise,
- Deepa S. Pureswaran,
- Evan Shanks, and
- Rob C. Johns
Insect outbreaks can cover vast geographic areas making it onerous to cost-effectively monitor populations to address management or ecological questions. Community science (or citizen science), which entails engaging the public to assist with data collection, provides a possible solution to this challenge for the spruce budworm (Choristoneura fumiferana Clemens), a major defoliating pest in North America. Here, we lay out the Budworm Tracker Program, a contributory community science program developed to help monitor spruce budworm moths throughout eastern Canada. The program outsources free pheromone trap kits to volunteers who periodically check and collect moths from their traps throughout the budworm flight period, then return them in a prepaid envelope to the organizers. Over three years, the program engaged an average of 216–375 volunteers and yielded a data return rate of 68%–89%, for a total of 16 311–54 525 moths per year. Volunteer retention among years was 71%–89%. Data from this program offer compelling evidence for the range of long-distance moth dispersal. Although our program was designed for spruce budworm, this template could easily be adapted for forestry, urban forestry, and agricultural systems to monitor any of the numerous organisms for which there is an established trapping method. - OPEN ACCESS
- Amy K. Teffer,
- Jonathan Carr,
- Amy Tabata,
- Angela Schulze,
- Ian Bradbury,
- Denise Deschamps,
- Carole-Anne Gillis,
- Eric B. Brunsdon,
- Gideon Mordecai, and
- Kristina M. Miller
Infectious agents are key components of animal ecology and drivers of host population dynamics. Knowledge of their diversity and transmission in the wild is necessary for the management and conservation of host species like Atlantic salmon (Salmo salar). Although pathogen exchange can occur throughout the salmon life cycle, evidence is lacking to support transmission during population mixing at sea or between farmed and wild salmon due to aquaculture exposure. We tested these hypotheses using a molecular approach that identified infectious agents and transmission potential among sub-adult Atlantic salmon at marine feeding areas and adults in three eastern Canadian rivers with varying aquaculture influence. We used high-throughput qPCR to quantify infection profiles and next generation sequencing to measure genomic variation among viral isolates. We identified 14 agents, including five not yet described as occurring in Eastern Canada. Phylogenetic analysis of piscine orthoreovirus showed homology between isolates from European and North American origin fish at sea, supporting the hypothesis of intercontinental transmission. We found no evidence to support aquaculture influence on wild adult infections, which varied relative to environmental conditions, life stage, and host origin. Our findings identify research opportunities regarding pathogen transmission and biological significance for wild Atlantic salmon populations. - OPEN ACCESSWith the widespread loss of biodiversity, zoos and aquariums are striving to become leaders in biodiversity conservation and research. Canada’s Accredited Zoos and Aquariums (CAZA) is a nonprofit organization created to represent its members, including as agencies of conservation and science. However, the contribution of CAZA members to conservation and science has not been quantified. We used research productivity in the form of peer-reviewed publications to systematically quantify biodiversity conservation engagement by CAZA institutions. We extracted publications from the ISI Web of Science database and found that the annual number of publications increased over time. CAZA members published most in the area of veterinary science, with few publications in biodiversity conservation. Organization age, research-orientated mission statements, and financial assets were significant predictors of research productivity. CAZA institutions also published significantly less (X¯ = 12.5 ± 5.52 SE) than members of the Association of Zoos and Aquariums (X¯ = 24.27 ± 5.08 SE), based in the United States. Zoos and aquariums are important resources in mitigating biodiversity loss, and are increasing their research output in this area. Nonetheless, only a small proportion of publications were in biodiversity conservation, and the majority of all publications occurred in zoo-centric journals.